multipers
Introduction
Multiparameter persistence introduction
Custom multi-filtrations
Compilation from sources
Contributions
Bibliography
Example zoo:
Time Series Classification
Graph classification
Molecular Embeddings
Degree Rips bifiltrations
Immunofluorescence images
Differentiation
Point Cloud Optimization
Filtration Learning
Modules and Functions tree
multipers
multipers
Index
Edit on GitHub
Index
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A
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B
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C
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D
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E
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F
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G
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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W
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Z
_
_blocks2boundary_dimension_grades() (in module multipers._slicer_meta)
_check_available() (in module multipers.io)
_check_axis() (multipers.ml.signed_measures.SignedMeasureFormatter method)
_check_backend() (multipers.ml.signed_measures.SignedMeasureFormatter method)
_check_measures() (multipers.ml.signed_measures.SignedMeasureFormatter method)
_check_resolution() (multipers.ml.signed_measures.SignedMeasureFormatter method)
_check_sm() (multipers.ml.signed_measures.SignedMeasureFormatter static method)
_check_weights() (multipers.ml.signed_measures.SignedMeasureFormatter method)
_collapse_edge_list() (in module multipers.multiparameter_edge_collapse)
_compute_grid_numpy() (in module multipers.grids)
_compute_signed_measure_parts() (in module multipers.ml.sliced_wasserstein)
_compute_signed_measure_projections() (in module multipers.ml.sliced_wasserstein)
_d_inf() (in module multipers.plots)
_define_bandwidths() (multipers.ml.point_clouds.PointCloud2FilteredComplex method)
_define_sts() (multipers.ml.point_clouds.PointCloud2FilteredComplex method)
_get_codensities() (multipers.ml.point_clouds.PointCloud2FilteredComplex method)
_get_distance_quantiles_and_threshold() (multipers.ml.point_clouds.PointCloud2FilteredComplex method)
_get_filtration_bounds() (multipers.ml.signed_measures.SignedMeasureFormatter method)
_get_module_bound() (multipers.ml.mma.MMAFormatter static method)
_get_sts_alpha() (multipers.ml.point_clouds.PointCloud2FilteredComplex method)
_get_sts_delaunay() (multipers.ml.point_clouds.PointCloud2FilteredComplex method)
_get_sts_rips() (multipers.ml.point_clouds.PointCloud2FilteredComplex method)
_infer_axis() (multipers.ml.mma.MMAFormatter static method)
_infer_bounding_box() (multipers.ml.mma.FilteredComplex2MMA method)
_infer_bounds() (multipers.ml.mma.MMAFormatter static method)
_infer_degrees() (multipers.ml.mma.MMAFormatter method)
_infer_filtration() (multipers.ml.signed_measures.FilteredComplex2SignedMeasure method)
_infer_grid() (multipers.ml.mma.MMAFormatter static method)
_infer_grids() (multipers.ml.signed_measures.SignedMeasureFormatter method)
_infer_num_parameters() (multipers.ml.mma.MMAFormatter static method)
_init_external_softwares() (in module multipers.io)
_input_checks() (multipers.ml.mma.FilteredComplex2MMA method)
(multipers.ml.signed_measures.FilteredComplex2SignedMeasure method)
_integrate_measure() (multipers.ml.signed_measures.SignedMeasureFormatter static method)
_is_filtered_complex() (multipers.ml.mma.FilteredComplex2MMA static method)
(multipers.ml.signed_measures.FilteredComplex2SignedMeasure static method)
_kernel() (in module multipers.ml.convolutions)
_maybe_from_dump() (multipers.ml.mma.MMAFormatter static method)
_pairwise() (in module multipers.ml.sliced_wasserstein)
_params_check() (multipers.ml.signed_measures.FilteredComplex2SignedMeasure method)
_path_init() (in module multipers.io)
_plot_imgs() (multipers.ml.signed_measures.SignedMeasure2Convolution method)
_plot_rectangle() (in module multipers.plots)
_plot_signed_measure_2() (in module multipers.plots)
_plot_signed_measure_4() (in module multipers.plots)
_plot_signed_measures() (multipers.ml.signed_measures.SignedMeasureFormatter method)
_print_stats() (multipers.ml.signed_measures.SignedMeasureFormatter method)
_pts_convolution_pykeops() (in module multipers.ml.convolutions)
_pts_convolution_sparse_old() (in module multipers.ml.convolutions)
_put_temp_files_to_ram() (in module multipers.io)
_rectangle() (in module multipers.plots)
_rescale_measures() (multipers.ml.signed_measures.SignedMeasureFormatter method)
_signed_measure_from_scc() (in module multipers._signed_measure_meta)
_signed_measure_from_slicer() (in module multipers._signed_measure_meta)
_sklearn_auto_wrap_output_keys (multipers.ml.kernels.DistanceList2DistanceMatrix attribute)
(multipers.ml.kernels.DistanceMatrices2DistancesList attribute)
(multipers.ml.kernels.DistanceMatrix2DistanceList attribute)
(multipers.ml.kernels.DistanceMatrix2Kernel attribute)
(multipers.ml.kernels.DistancesLists2DistanceMatrices attribute)
(multipers.ml.mma.FilteredComplex2MMA attribute)
(multipers.ml.mma.MMA2IMG attribute)
(multipers.ml.mma.MMA2Landscape attribute)
(multipers.ml.mma.MMAFormatter attribute)
(multipers.ml.mma.SimplexTree2MMA attribute)
(multipers.ml.point_clouds.PointCloud2FilteredComplex attribute)
(multipers.ml.point_clouds.PointCloud2SimplexTree attribute)
(multipers.ml.signed_measures.DegreeRips2SignedMeasure attribute)
(multipers.ml.signed_measures.FilteredComplex2SignedMeasure attribute)
(multipers.ml.signed_measures.SignedMeasure2Convolution attribute)
(multipers.ml.signed_measures.SignedMeasure2SlicedWassersteinDistance attribute)
(multipers.ml.signed_measures.SignedMeasureFormatter attribute)
(multipers.ml.signed_measures.SignedMeasures2SlicedWassersteinDistances attribute)
(multipers.ml.signed_measures.SimplexTree2RectangleDecomposition attribute)
(multipers.ml.signed_measures.SimplexTree2SignedMeasure attribute)
(multipers.ml.sliced_wasserstein.SlicedWassersteinDistance attribute)
(multipers.ml.sliced_wasserstein.WassersteinDistance attribute)
(multipers.ml.tools.SimplexTreeEdgeCollapser attribute)
_sklearn_wrapper() (in module multipers.ml.sliced_wasserstein)
_sliced_wasserstein_distance() (in module multipers.ml.sliced_wasserstein)
_sliced_wasserstein_distance_on_projections() (in module multipers.ml.sliced_wasserstein)
_slicer_from_blocks() (in module multipers._slicer_meta)
_slicer_from_simplextree() (in module multipers._slicer_meta)
_sm2smi() (multipers.ml.signed_measures.SignedMeasure2Convolution method)
_st2ranktensor() (in module multipers.ml.signed_measures)
_test_signed_betti() (in module multipers.tests.test_signed_betti)
_todo_partition() (in module multipers.grids)
_todo_regular_closest() (in module multipers.grids)
_todo_regular_left() (in module multipers.grids)
_torch_regular_closest() (in module multipers.grids)
_transform1() (multipers.ml.signed_measures.DegreeRips2SignedMeasure method)
_transform_from_sparse() (multipers.ml.signed_measures.SignedMeasure2Convolution method)
_wasserstein_distance() (in module multipers.ml.sliced_wasserstein)
_wasserstein_distance_on_parts() (in module multipers.ml.sliced_wasserstein)
A
assert_sm() (in module multipers.tests)
assert_sm_pair() (in module multipers.tests)
assert_st_simplices() (in module multipers.tests)
B
barcode_from_rank_sm() (in module multipers.point_measure)
batch_signed_measure_convolutions() (in module multipers.ml.convolutions)
C
clean_signed_measure() (in module multipers.point_measure)
clean_sms() (in module multipers.point_measure)
clear_io() (in module multipers.io)
coarsen_points() (in module multipers.grids)
compute_bounding_box() (in module multipers.grids)
compute_grid() (in module multipers.grids)
convolution_signed_measures() (in module multipers.ml.convolutions)
copy_transform() (multipers.ml.mma.MMAFormatter static method)
D
deep_format_measure() (multipers.ml.signed_measures.SignedMeasureFormatter static method)
DegreeRips2SignedMeasure (class in multipers.ml.signed_measures)
DistanceList2DistanceMatrix (class in multipers.ml.kernels)
DistanceMatrices2DistancesList (class in multipers.ml.kernels)
DistanceMatrix2DistanceList (class in multipers.ml.kernels)
DistanceMatrix2Kernel (class in multipers.ml.kernels)
DistancesLists2DistanceMatrices (class in multipers.ml.kernels)
DTM (class in multipers.ml.convolutions)
E
estimate_error() (in module multipers.distances)
estimate_matching() (in module multipers.distances)
estimate_rank_from_rank_sm() (in module multipers.point_measure)
evaluate_in_grid() (in module multipers.grids)
exponential_kernel() (in module multipers.ml.convolutions)
F
FilteredComplex2MMA (class in multipers.ml.mma)
FilteredComplex2SignedMeasure (class in multipers.ml.signed_measures)
filtration_grid_to_coordinates() (in module multipers.ml.tools)
fit() (multipers.ml.convolutions.DTM method)
(multipers.ml.convolutions.KDE method)
(multipers.ml.kernels.DistanceList2DistanceMatrix method)
(multipers.ml.kernels.DistanceMatrices2DistancesList method)
(multipers.ml.kernels.DistanceMatrix2DistanceList method)
(multipers.ml.kernels.DistanceMatrix2Kernel method)
(multipers.ml.kernels.DistancesLists2DistanceMatrices method)
(multipers.ml.mma.FilteredComplex2MMA method)
(multipers.ml.mma.MMA2IMG method)
(multipers.ml.mma.MMA2Landscape method)
(multipers.ml.mma.MMAFormatter method)
(multipers.ml.point_clouds.PointCloud2FilteredComplex method)
(multipers.ml.signed_measures.DegreeRips2SignedMeasure method)
(multipers.ml.signed_measures.FilteredComplex2SignedMeasure method)
(multipers.ml.signed_measures.SignedMeasure2Convolution method)
(multipers.ml.signed_measures.SignedMeasure2SlicedWassersteinDistance method)
(multipers.ml.signed_measures.SignedMeasureFormatter method)
(multipers.ml.signed_measures.SignedMeasures2SlicedWassersteinDistances method)
(multipers.ml.signed_measures.SimplexTree2RectangleDecomposition method)
(multipers.ml.sliced_wasserstein.SlicedWassersteinDistance method)
(multipers.ml.sliced_wasserstein.WassersteinDistance method)
(multipers.ml.tools.SimplexTreeEdgeCollapser method)
function_delaunay_presentation() (in module multipers.io)
function_delaunay_presentation_to_slicer() (in module multipers.io)
function_rips_signed_measure() (in module multipers.function_rips)
function_rips_surface() (in module multipers.function_rips)
G
gaussian_kernel() (in module multipers.ml.convolutions)
get_degree_rips() (in module multipers.function_rips)
get_filtration_weights_grid() (in module multipers.ml.tools)
get_orbit5k() (in module multipers.data.synthetic)
get_simplex_tree_from_delayed() (in module multipers.ml.tools)
get_simplextree() (in module multipers.ml.tools)
get_sm_with_axis() (in module multipers.pickle)
get_sm_without_axis() (in module multipers.pickle)
I
integrate_measure() (in module multipers.point_measure)
integrate_measure_python() (in module multipers.point_measure)
K
KDE (class in multipers.ml.convolutions)
L
load() (in module multipers.pickle)
load_with_axis() (in module multipers.pickle)
load_without_axis() (in module multipers.pickle)
M
MMA2IMG (class in multipers.ml.mma)
MMA2Landscape (class in multipers.ml.mma)
MMAFormatter (class in multipers.ml.mma)
module
multipers
multipers._signed_measure_meta
multipers._slicer_meta
multipers.data
multipers.data.minimal_presentation_to_st_bf
multipers.data.synthetic
multipers.distances
multipers.function_rips
multipers.grids
multipers.io
multipers.ml
multipers.ml.convolutions
multipers.ml.kernels
multipers.ml.mma
multipers.ml.point_clouds
multipers.ml.signed_betti
multipers.ml.signed_measures
multipers.ml.sliced_wasserstein
multipers.ml.tools
multipers.multiparameter_edge_collapse
multipers.multiparameter_module_approximation
multipers.pickle
multipers.plots
multipers.point_measure
multipers.tests
multipers.tests.test_diff_helper
multipers.tests.test_hilbert_function
multipers.tests.test_point_clouds
multipers.tests.test_signed_betti
multipers.tests.test_simplextreemulti
module_approximation() (in module multipers)
(in module multipers.multiparameter_module_approximation)
module_approximation_from_slicer() (in module multipers.multiparameter_module_approximation)
multipers
module
multipers._signed_measure_meta
module
multipers._slicer_meta
module
multipers.data
module
multipers.data.minimal_presentation_to_st_bf
module
multipers.data.synthetic
module
multipers.distances
module
multipers.function_rips
module
multipers.grids
module
multipers.io
module
multipers.ml
module
multipers.ml.convolutions
module
multipers.ml.kernels
module
multipers.ml.mma
module
multipers.ml.point_clouds
module
multipers.ml.signed_betti
module
multipers.ml.signed_measures
module
multipers.ml.sliced_wasserstein
module
multipers.ml.tools
module
multipers.multiparameter_edge_collapse
module
multipers.multiparameter_module_approximation
module
multipers.pickle
module
multipers.plots
module
multipers.point_measure
module
multipers.tests
module
multipers.tests.test_diff_helper
module
multipers.tests.test_hilbert_function
module
multipers.tests.test_point_clouds
module
multipers.tests.test_signed_betti
module
multipers.tests.test_simplextreemulti
module
multivariate_gaussian_kernel() (in module multipers.ml.convolutions)
N
noisy_annulus() (in module multipers.data.synthetic)
O
orbit() (in module multipers.data.synthetic)
P
pairwise_signed_measure_distances() (in module multipers.ml.sliced_wasserstein)
plot2d_PyModule() (in module multipers.plots)
plot_signed_measure() (in module multipers.plots)
plot_signed_measures() (in module multipers.plots)
plot_surface() (in module multipers.plots)
plot_surfaces() (in module multipers.plots)
PointCloud2FilteredComplex (class in multipers.ml.point_clouds)
PointCloud2SimplexTree (class in multipers.ml.point_clouds)
predict() (multipers.ml.kernels.DistanceMatrices2DistancesList method)
(multipers.ml.signed_measures.SignedMeasure2SlicedWassersteinDistance method)
push_to_grid() (in module multipers.grids)
R
random_st() (in module multipers.tests)
rank_decomposition_by_rectangles() (in module multipers.ml.signed_betti)
reduce_complex() (in module multipers.io)
rescale_sparse_signed_measure() (in module multipers.ml.signed_measures)
S
save() (in module multipers.pickle)
save_with_axis() (in module multipers.pickle)
save_without_axis() (in module multipers.pickle)
scc2disk() (in module multipers.io)
scc2disk_old() (in module multipers.io)
scc_parser() (in module multipers.io)
scc_parser__old() (in module multipers.io)
scc_reduce_from_str() (in module multipers.io)
scc_reduce_from_str_to_slicer() (in module multipers.io)
score_samples() (multipers.ml.convolutions.DTM method)
(multipers.ml.convolutions.KDE method)
score_samples_diff() (multipers.ml.convolutions.DTM method)
set_fit_request() (multipers.ml.mma.MMAFormatter method)
set_transform_request() (multipers.ml.mma.MMAFormatter method)
signed_betti() (in module multipers.ml.signed_betti)
signed_measure() (in module multipers)
(in module multipers._signed_measure_meta)
SignedMeasure2Convolution (class in multipers.ml.signed_measures)
SignedMeasure2SlicedWassersteinDistance (class in multipers.ml.signed_measures)
SignedMeasureFormatter (class in multipers.ml.signed_measures)
SignedMeasures2SlicedWassersteinDistances (class in multipers.ml.signed_measures)
SimplexTree2MMA (class in multipers.ml.mma)
SimplexTree2RectangleDecomposition (class in multipers.ml.signed_measures)
SimplexTree2SignedMeasure (class in multipers.ml.signed_measures)
SimplexTreeEdgeCollapser (class in multipers.ml.tools)
SimplexTreeMulti() (in module multipers)
sinc_kernel() (in module multipers.ml.convolutions)
SlicedWassersteinDistance (class in multipers.ml.sliced_wasserstein)
Slicer() (in module multipers)
(in module multipers._slicer_meta)
sm2diff() (in module multipers.distances)
sm_distance() (in module multipers.distances)
sm_in_grid() (in module multipers.grids)
sms_in_grid() (in module multipers.grids)
sort_sm() (in module multipers.tests)
sparsify() (in module multipers.point_measure)
T
tensor_möbius_inversion() (in module multipers.ml.signed_measures)
test_1() (in module multipers.tests.test_simplextreemulti)
test_2() (in module multipers.tests.test_simplextreemulti)
test_3() (in module multipers.tests.test_hilbert_function)
(in module multipers.tests.test_simplextreemulti)
test_4() (in module multipers.tests.test_hilbert_function)
(in module multipers.tests.test_simplextreemulti)
test_5() (in module multipers.tests.test_hilbert_function)
test_distance_matrix_filling() (in module multipers.tests.test_simplextreemulti)
test_flagify() (in module multipers.tests.test_simplextreemulti)
test_h0_rips_density() (in module multipers.tests.test_diff_helper)
test_h1_rips_density() (in module multipers.tests.test_diff_helper)
test_make_filtration_non_decreasing() (in module multipers.tests.test_simplextreemulti)
test_rank_decomposition() (in module multipers.tests.test_signed_betti)
test_serialize() (in module multipers.tests.test_simplextreemulti)
test_throw_test() (in module multipers.tests.test_point_clouds)
three_annulus() (in module multipers.data.synthetic)
to_lazy() (multipers.ml.convolutions.KDE static method)
todense() (in module multipers.grids)
transform() (multipers.ml.kernels.DistanceList2DistanceMatrix method)
(multipers.ml.kernels.DistanceMatrices2DistancesList method)
(multipers.ml.kernels.DistanceMatrix2DistanceList method)
(multipers.ml.kernels.DistanceMatrix2Kernel method)
(multipers.ml.kernels.DistancesLists2DistanceMatrices method)
(multipers.ml.mma.FilteredComplex2MMA method)
(multipers.ml.mma.MMA2IMG method)
(multipers.ml.mma.MMA2Landscape method)
(multipers.ml.mma.MMAFormatter method)
(multipers.ml.point_clouds.PointCloud2FilteredComplex method)
(multipers.ml.signed_measures.DegreeRips2SignedMeasure method)
(multipers.ml.signed_measures.FilteredComplex2SignedMeasure method)
(multipers.ml.signed_measures.SignedMeasure2Convolution method)
(multipers.ml.signed_measures.SignedMeasure2SlicedWassersteinDistance method)
(multipers.ml.signed_measures.SignedMeasureFormatter method)
(multipers.ml.signed_measures.SignedMeasures2SlicedWassersteinDistances method)
(multipers.ml.signed_measures.SimplexTree2RectangleDecomposition method)
(multipers.ml.sliced_wasserstein.SlicedWassersteinDistance method)
(multipers.ml.sliced_wasserstein.WassersteinDistance method)
(multipers.ml.tools.SimplexTreeEdgeCollapser method)
transform1() (multipers.ml.signed_measures.FilteredComplex2SignedMeasure method)
U
unsparse_signed_measure() (multipers.ml.signed_measures.SignedMeasureFormatter method)
W
WassersteinDistance (class in multipers.ml.sliced_wasserstein)
Z
zero_out_sm() (in module multipers.point_measure)
zero_out_sms() (in module multipers.point_measure)